H2MZU7_ORYLA protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2MZU7_ORYLA

Uncharacterized protein. (279 aa)

Predicted Functional Partners:

PTPRM

0.894

ENSORLP00000041147

0.496

grb2

0.485

PTK7

0.482

ror1

0.459

ENSORLP00000026165

0.459

ror2

0.459

LOC101155954

0.434

LOC101155315

0.434

lrit3

0.434

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000026165	H2MZU7_ORYLA	ENSORLP00000026165	ENSORLP00000024616	Kringle domain-containing protein.	Uncharacterized protein.	0.459
ENSORLP00000026165	PTPRM	ENSORLP00000026165	ENSORLP00000031291	Kringle domain-containing protein.	Uncharacterized protein.	0.459
ENSORLP00000041147	H2MZU7_ORYLA	ENSORLP00000041147	ENSORLP00000024616	Ig-like domain-containing protein.	Uncharacterized protein.	0.496
ENSORLP00000041147	LOC101155315	ENSORLP00000041147	ENSORLP00000022651	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.758
ENSORLP00000041147	LOC101155954	ENSORLP00000041147	ENSORLP00000008677	Ig-like domain-containing protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.758
ENSORLP00000041147	PTPRM	ENSORLP00000041147	ENSORLP00000031291	Ig-like domain-containing protein.	Uncharacterized protein.	0.496
ENSORLP00000041147	grb2	ENSORLP00000041147	ENSORLP00000019097	Ig-like domain-containing protein.	Growth factor receptor-bound protein 2b.	0.528
ENSORLP00000041147	lrit3	ENSORLP00000041147	ENSORLP00000025515	Ig-like domain-containing protein.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.758
H2MZU7_ORYLA	ENSORLP00000026165	ENSORLP00000024616	ENSORLP00000026165	Uncharacterized protein.	Kringle domain-containing protein.	0.459
H2MZU7_ORYLA	ENSORLP00000041147	ENSORLP00000024616	ENSORLP00000041147	Uncharacterized protein.	Ig-like domain-containing protein.	0.496
H2MZU7_ORYLA	LOC101155315	ENSORLP00000024616	ENSORLP00000022651	Uncharacterized protein.	Ig-like domain-containing protein.	0.434
H2MZU7_ORYLA	LOC101155954	ENSORLP00000024616	ENSORLP00000008677	Uncharacterized protein.	Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.	0.434
H2MZU7_ORYLA	PTK7	ENSORLP00000024616	ENSORLP00000026392	Uncharacterized protein.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.482
H2MZU7_ORYLA	PTPRM	ENSORLP00000024616	ENSORLP00000031291	Uncharacterized protein.	Uncharacterized protein.	0.894
H2MZU7_ORYLA	grb2	ENSORLP00000024616	ENSORLP00000019097	Uncharacterized protein.	Growth factor receptor-bound protein 2b.	0.485
H2MZU7_ORYLA	lrit3	ENSORLP00000024616	ENSORLP00000025515	Uncharacterized protein.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.434
H2MZU7_ORYLA	ror1	ENSORLP00000024616	ENSORLP00000012786	Uncharacterized protein.	Receptor tyrosine kinase-like orphan receptor 1; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.459
H2MZU7_ORYLA	ror2	ENSORLP00000024616	ENSORLP00000031374	Uncharacterized protein.	Receptor tyrosine kinase-like orphan receptor 2; Belongs to the protein kinase superfamily. Tyr protein kinase family. ROR subfamily.	0.459
LOC101155315	ENSORLP00000041147	ENSORLP00000022651	ENSORLP00000041147	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.758
LOC101155315	H2MZU7_ORYLA	ENSORLP00000022651	ENSORLP00000024616	Ig-like domain-containing protein.	Uncharacterized protein.	0.434