STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trub2TruB pseudouridine (psi) synthase family member 2. (331 aa)    
Predicted Functional Partners:
gar1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.975
ENSORLP00000033990
NOP10 ribonucleoprotein homolog (yeast).
   
 0.962
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
   
 0.953
nop56
NOP56 ribonucleoprotein homolog.
   
 
 0.942
nop58
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.931
fbl
Fibrillarin.
   
 
 0.929
LOC101162339
Uncharacterized protein.
   
 
 0.888
wrap53
WD repeat containing, antisense to TP53.
    
 0.883
nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.850
rpp38
Ribonuclease P/MRP 38 subunit.
  
 0.830
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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