STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stx10Syntaxin 10. (247 aa)    
Predicted Functional Partners:
vamp4
Vesicle-associated membrane protein 4.
    
 0.985
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.985
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.975
LOC105354787
Vesicle-associated membrane protein 8 (endobrevin).
    
 0.971
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.964
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.960
GCC2
GRIP domain-containing protein.
   
 
 0.958
snap29
Synaptosome associated protein 29.
    
 0.941
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
    
 0.941
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.925
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.