STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc9Zinc finger, CCHC domain containing 9. (259 aa)    
Predicted Functional Partners:
rexo4
REX4 homolog, 3'-5' exonuclease.
   
   0.701
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 
 0.596
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
    0.585
mtrex
Uncharacterized protein.
   
 
 0.568
rbm34
RNA binding motif protein 34.
   
 
 0.552
LOC105357348
Serine and arginine rich splicing factor 5b.
   
 
 0.534
ltv1
LTV1 ribosome biogenesis factor.
   
   0.494
bysl
Bystin-like.
   
   0.481
srsf6
Serine and arginine rich splicing factor 6a.
   
 
 0.455
srsf5
Serine and arginine rich splicing factor 5a.
   
 
 0.454
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.