STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptprgCarbonic anhydrase XVI b. (1050 aa)    
Predicted Functional Partners:
cntn2
Contactin 2.
    
 0.689
LOC101159916
Contactin 3a, tandem duplicate 1.
    
 0.635
LOC101160409
Contactin 3a, tandem duplicate 2.
    
 0.635
LOC101166021
Contactin 1b.
    
 0.635
LOC101162284
Contactin 3b.
    
 0.635
LOC101167031
Contactin 4.
    
 0.635
cntn5
Contactin 5.
    
 0.635
CNTN1
Contactin 1.
    
 0.635
LOC101166787
Uncharacterized protein.
    
 0.635
grin2c
Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.
   
 
 0.628
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.