STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sqstm1Sequestosome 1. (436 aa)    
Predicted Functional Partners:
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.981
gabarap
GABA(A) receptor-associated protein b.
   
 0.981
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.980
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.972
LOC101170049
Zgc:92606.
   
 0.963
Atm
Uncharacterized protein.
     
 0.960
ubc
Ubiquitin B.
   
 0.954
LOC101155936
NBR1 autophagy cargo receptor b.
    
 0.944
nbr1
NBR1 autophagy cargo receptor a.
    
 0.944
prkci
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.942
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.