STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbxo38F-box protein 38. (1149 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
      
 0.690
tdrp
Si:ch211-225h24.2.
      
 0.670
trappc11
Trafficking protein particle complex 11.
   
    0.622
mon2
MON2 homolog, regulator of endosome-to-Golgi trafficking.
   
  
 0.613
wdr48
WD repeat domain 48b.
   
    0.595
cul1
Cullin 1b; Belongs to the cullin family.
    
 
 0.571
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
      
 0.558
ap3d1
Adaptor related protein complex 3 subunit delta 1.
   
  
 0.468
pak1ip1
PAK1 interacting protein 1.
      
 0.457
zswim7
Zinc finger, SWIM-type containing 7.
      
 0.457
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.