STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frem1Fras1 related extracellular matrix 1a. (2073 aa)    
Predicted Functional Partners:
LOC101173870
Kazal-type serine peptidase inhibitor domain 3.
      
 0.679
sema3g
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.
     
 0.653
LOC101168113
Ankyrin repeat and sterile alpha motif domain containing 1Ab.
   
  0.588
LOC101161704
Si:dkeyp-9d4.3.
   
  0.588
anks1b
Ankyrin repeat and sterile alpha motif domain containing 1B.
   
  0.588
caskin1
CASK interacting protein 1.
   
  0.588
ANKS1A
Ankyrin repeat and sterile alpha motif domain containing 1A.
   
  0.588
epha7
Eph receptor A7.
      
 0.584
crim1
Uncharacterized protein.
    
 
 0.578
COL8A1
Collagen type VIII alpha 1 chain.
      
 0.562
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.