STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yipf1Protein YIPF. (294 aa)    
Predicted Functional Partners:
yipf6
Protein YIPF.
   
 
 0.791
yipf4
Protein YIPF.
   
 
 0.755
yipf5
Protein YIPF.
   
 
 0.664
LOC101169003
Protein YIPF.
   
 
 0.664
LOC101169291
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.591
LOC101167614
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.591
tvp23b
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.591
yipf3
Protein YIPF.
   
  
 0.572
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
   
  
 0.519
rabac1
PRA1 family protein.
   
  
 0.441
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.