STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xpaXeroderma pigmentosum, complementation group A. (277 aa)    
Predicted Functional Partners:
ercc3
Excision repair cross-complementation group 3.
    
 0.995
ercc4
Excision repair cross-complementation group 4.
    
 0.991
ercc1
Excision repair cross-complementation group 1.
    
 0.990
fancm
Uncharacterized protein.
    
 0.982
ercc6
Excision repair cross-complementation group 6.
    
 0.981
ercc2
Excision repair cross-complementation group 2.
    
 0.979
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 0.970
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.958
rpa2
Replication protein A2.
    
 0.948
faap24
FA core complex associated protein 24.
    
 0.948
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.