Rif1 protein (Oryzias latipes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Experiments

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[Homology]

Score

Rif1

Uncharacterized protein. (1520 aa)

Predicted Functional Partners:

tp53bp1

0.804

paxip1

0.726

mdc1

0.725

Atm

0.723

ENSORLP00000027619

0.723

pias4

0.705

bard1

0.686

mre11

0.662

brca1

0.645

xrcc6

0.644

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atm	ENSORLP00000027619	ENSORLP00000026266	ENSORLP00000027619	Uncharacterized protein.	TAN domain-containing protein.	0.929
Atm	Rif1	ENSORLP00000026266	ENSORLP00000025841	Uncharacterized protein.	Uncharacterized protein.	0.723
Atm	bard1	ENSORLP00000026266	ENSORLP00000020088	Uncharacterized protein.	BRCA1 associated RING domain 1.	0.880
Atm	brca1	ENSORLP00000026266	ENSORLP00000005763	Uncharacterized protein.	Uncharacterized protein.	0.993
Atm	mdc1	ENSORLP00000026266	ENSORLP00000030323	Uncharacterized protein.	Uncharacterized protein.	0.863
Atm	mre11	ENSORLP00000026266	ENSORLP00000009106	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.997
Atm	paxip1	ENSORLP00000026266	ENSORLP00000010077	Uncharacterized protein.	PAX interacting (with transcription-activation domain) protein 1.	0.863
Atm	pias4	ENSORLP00000026266	ENSORLP00000006265	Uncharacterized protein.	Protein inhibitor of activated STAT, 4a.	0.754
Atm	tp53bp1	ENSORLP00000026266	ENSORLP00000033455	Uncharacterized protein.	Tumor protein p53 binding protein, 1.	0.944
Atm	xrcc6	ENSORLP00000026266	ENSORLP00000003026	Uncharacterized protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.907
ENSORLP00000027619	Atm	ENSORLP00000027619	ENSORLP00000026266	TAN domain-containing protein.	Uncharacterized protein.	0.929
ENSORLP00000027619	Rif1	ENSORLP00000027619	ENSORLP00000025841	TAN domain-containing protein.	Uncharacterized protein.	0.723
ENSORLP00000027619	bard1	ENSORLP00000027619	ENSORLP00000020088	TAN domain-containing protein.	BRCA1 associated RING domain 1.	0.880
ENSORLP00000027619	brca1	ENSORLP00000027619	ENSORLP00000005763	TAN domain-containing protein.	Uncharacterized protein.	0.915
ENSORLP00000027619	mdc1	ENSORLP00000027619	ENSORLP00000030323	TAN domain-containing protein.	Uncharacterized protein.	0.877
ENSORLP00000027619	mre11	ENSORLP00000027619	ENSORLP00000009106	TAN domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.972
ENSORLP00000027619	paxip1	ENSORLP00000027619	ENSORLP00000010077	TAN domain-containing protein.	PAX interacting (with transcription-activation domain) protein 1.	0.863
ENSORLP00000027619	pias4	ENSORLP00000027619	ENSORLP00000006265	TAN domain-containing protein.	Protein inhibitor of activated STAT, 4a.	0.754
ENSORLP00000027619	tp53bp1	ENSORLP00000027619	ENSORLP00000033455	TAN domain-containing protein.	Tumor protein p53 binding protein, 1.	0.944
ENSORLP00000027619	xrcc6	ENSORLP00000027619	ENSORLP00000003026	TAN domain-containing protein.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.907