ENSORLP00000025944 protein (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSORLP00000025944

Uncharacterized protein. (510 aa)

Predicted Functional Partners:

fancm

0.833

wdr73

0.619

rbbp4

0.619

LOC101156710

0.619

med14

0.594

ino80d

0.546

med12

0.546

rps27a

0.523

uba52

0.490

H2M970_ORYLA

0.490

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000025944	H2M970_ORYLA	ENSORLP00000025944	ENSORLP00000015051	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.490
ENSORLP00000025944	LOC101156710	ENSORLP00000025944	ENSORLP00000021495	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.619
ENSORLP00000025944	fancm	ENSORLP00000025944	ENSORLP00000018174	Uncharacterized protein.	Uncharacterized protein.	0.833
ENSORLP00000025944	ino80d	ENSORLP00000025944	ENSORLP00000026775	Uncharacterized protein.	INO80 complex subunit Da.	0.546
ENSORLP00000025944	med12	ENSORLP00000025944	ENSORLP00000028221	Uncharacterized protein.	Mediator complex subunit 12.	0.546
ENSORLP00000025944	med14	ENSORLP00000025944	ENSORLP00000013557	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.594
ENSORLP00000025944	rbbp4	ENSORLP00000025944	ENSORLP00000021493	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.619
ENSORLP00000025944	rps27a	ENSORLP00000025944	ENSORLP00000038189	Uncharacterized protein.	Ribosomal protein S27a.	0.523
ENSORLP00000025944	uba52	ENSORLP00000025944	ENSORLP00000010731	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.490
ENSORLP00000025944	wdr73	ENSORLP00000025944	ENSORLP00000019304	Uncharacterized protein.	Uncharacterized protein.	0.619
H2M970_ORYLA	ENSORLP00000025944	ENSORLP00000015051	ENSORLP00000025944	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.490
H2M970_ORYLA	LOC101156710	ENSORLP00000015051	ENSORLP00000021495	Ubiquitin-like domain-containing protein.	Retinoblastoma binding protein 4, like.	0.545
H2M970_ORYLA	fancm	ENSORLP00000015051	ENSORLP00000018174	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.969
H2M970_ORYLA	rbbp4	ENSORLP00000015051	ENSORLP00000021493	Ubiquitin-like domain-containing protein.	Retinoblastoma binding protein 4.	0.545
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	wdr73	ENSORLP00000015051	ENSORLP00000019304	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.457
LOC101156710	ENSORLP00000025944	ENSORLP00000021495	ENSORLP00000025944	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.619
LOC101156710	H2M970_ORYLA	ENSORLP00000021495	ENSORLP00000015051	Retinoblastoma binding protein 4, like.	Ubiquitin-like domain-containing protein.	0.545
LOC101156710	rbbp4	ENSORLP00000021495	ENSORLP00000021493	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 4.	0.900