mtx2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mtx2

Metaxin 2. (259 aa)

Predicted Functional Partners:

samm50

0.956

LOC101164364

0.956

mtx3

0.926

immt

0.899

LOC101163689

0.897

LOC101165273

0.870

TOMM7

0.788

LOC101168127

0.740

LOC101160162

0.722

LOC101174907

0.722

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101160162	LOC101164364	ENSORLP00000001360	ENSORLP00000014869	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Sorting and assembly machinery component 50 homolog, like.	0.648
LOC101160162	LOC101165273	ENSORLP00000001360	ENSORLP00000029973	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.900
LOC101160162	LOC101168127	ENSORLP00000001360	ENSORLP00000010564	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.904
LOC101160162	LOC101174907	ENSORLP00000001360	ENSORLP00000038934	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.540
LOC101160162	immt	ENSORLP00000001360	ENSORLP00000025572	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.943
LOC101160162	mtx2	ENSORLP00000001360	ENSORLP00000025946	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Metaxin 2.	0.722
LOC101160162	samm50	ENSORLP00000001360	ENSORLP00000001697	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	SAMM50 sorting and assembly machinery component.	0.648
LOC101163689	LOC101164364	ENSORLP00000021097	ENSORLP00000014869	Metaxin.	Sorting and assembly machinery component 50 homolog, like.	0.963
LOC101163689	LOC101165273	ENSORLP00000021097	ENSORLP00000029973	Metaxin.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.431
LOC101163689	TOMM7	ENSORLP00000021097	ENSORLP00000031339	Metaxin.	Translocase of outer mitochondrial membrane 7.	0.815
LOC101163689	immt	ENSORLP00000021097	ENSORLP00000025572	Metaxin.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.634
LOC101163689	mtx2	ENSORLP00000021097	ENSORLP00000025946	Metaxin.	Metaxin 2.	0.897
LOC101163689	mtx3	ENSORLP00000021097	ENSORLP00000041307	Metaxin.	Metaxin.	0.557
LOC101163689	samm50	ENSORLP00000021097	ENSORLP00000001697	Metaxin.	SAMM50 sorting and assembly machinery component.	0.963
LOC101164364	LOC101160162	ENSORLP00000014869	ENSORLP00000001360	Sorting and assembly machinery component 50 homolog, like.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.648
LOC101164364	LOC101163689	ENSORLP00000014869	ENSORLP00000021097	Sorting and assembly machinery component 50 homolog, like.	Metaxin.	0.963
LOC101164364	LOC101165273	ENSORLP00000014869	ENSORLP00000029973	Sorting and assembly machinery component 50 homolog, like.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.876
LOC101164364	LOC101168127	ENSORLP00000014869	ENSORLP00000010564	Sorting and assembly machinery component 50 homolog, like.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.496
LOC101164364	LOC101174907	ENSORLP00000014869	ENSORLP00000038934	Sorting and assembly machinery component 50 homolog, like.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.648
LOC101164364	TOMM7	ENSORLP00000014869	ENSORLP00000031339	Sorting and assembly machinery component 50 homolog, like.	Translocase of outer mitochondrial membrane 7.	0.801