STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162948Nucleolar and coiled-body phosphoprotein 1. (910 aa)    
Predicted Functional Partners:
nop56
NOP56 ribonucleoprotein homolog.
   
 
 0.986
fbl
Fibrillarin.
   
 
 0.977
dkc1
Dyskeratosis congenita 1, dyskerin.
   
 
 0.975
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.970
rsl1d1
Ribosomal L1 domain containing 1.
   
 
 0.927
polr1b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.875
trub1
TruB pseudouridine (psi) synthase family member 1.
   
 
 0.856
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
  
 0.853
ltv1
LTV1 ribosome biogenesis factor.
   
  
 0.848
polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.843
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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