STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000026006Ly6 domain containing, pigment cell. (183 aa)    
Predicted Functional Partners:
pusl1
tRNA pseudouridine synthase.
      
 0.601
tmem141
Transmembrane protein 141.
      
 0.601
tmem244
Transmembrane protein 244.
      
 0.576
LOC101172090
Si:ch73-233f7.1.
      
 0.504
LOC101163840
Uncharacterized protein.
      
 0.504
snap47
Synaptosome associated protein 47.
      
 0.501
cacna1h
Calcium channel, voltage-dependent, T type, alpha 1H subunit b.
      
 0.432
rsrc1
Uncharacterized protein.
      
 0.407
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.