STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem141Transmembrane protein 141. (126 aa)    
Predicted Functional Partners:
pusl1
tRNA pseudouridine synthase.
      
 0.863
tmem244
Transmembrane protein 244.
      
 0.834
rsrc1
Uncharacterized protein.
   
  
 0.770
ENSORLP00000026006
Ly6 domain containing, pigment cell.
      
 0.601
phpt1
Uncharacterized protein.
   
  
 0.570
zbtb4
Zinc finger and BTB domain containing 4.
      
 0.560
ganab
Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family.
      
 0.558
snap47
Synaptosome associated protein 47.
      
 0.517
LOC101172090
Si:ch73-233f7.1.
      
 0.501
LOC101163840
Uncharacterized protein.
      
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.