STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162393Phospholipase A2, group XIIB. (286 aa)    
Predicted Functional Partners:
pla2g1b
Phospholipase A(2).
   
 
 0.971
LOC105355175
Phospholipase A2 group III.
     
 0.960
proca1
Protein interacting with cyclin A1.
     
 0.960
LOC101170929
Phospholipase A(2).
   
 
 0.950
pla2g4a
Phospholipase A2.
   
 
 0.922
pla2g4c
Uncharacterized protein.
   
 
 0.908
alox5
Arachidonate 5-lipoxygenase a.
   
  0.905
LOC101174953
Arachidonate 12-lipoxygenase.
   
  0.905
chpt1
Choline phosphotransferase 1; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.903
cyp3a
Uncharacterized protein.
     
 0.903
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.