STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174372Uncharacterized protein. (970 aa)    
Predicted Functional Partners:
LOC100125525
Uncharacterized protein.
    
  0.901
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.871
Tep1
Uncharacterized protein.
   
 0.620
ENSORLP00000040907
TROVE domain-containing protein.
   
 0.620
ENSORLP00000041818
Uncharacterized protein.
   
 0.620
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 0.594
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
    
 0.594
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.589
anapc4
Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.
    
 0.586
anapc5
Anaphase promoting complex subunit 5.
   
 0.584
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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