STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pitrm1Pitrilysin metallopeptidase 1. (1027 aa)    
Predicted Functional Partners:
LOC101172288
Amyloid beta (A4) precursor protein b.
    
 
 0.845
APP
Amyloid beta precursor protein.
    
 
 0.845
mipep
Mitochondrial intermediate peptidase.
    
 
 0.689
ENSORLP00000039626
Frataxin.
     
 0.644
hspd1
Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.
   
 
  0.636
dld
Dihydrolipoyl dehydrogenase.
   
 
 0.629
atf6
BZIP domain-containing protein.
   
    0.621
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.616
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
 
 0.615
atp5f1b
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.611
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.