STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nkx3-2NK3 homeobox 2. (263 aa)    
Predicted Functional Partners:
hand2
Heart and neural crest derivatives expressed 2.
    
 
 0.565
foxf2
Forkhead box F2.
   
 
 0.548
barx1
BARX homeobox 1.
   
  
0.522
pax9
Paired box 9.
      
 0.504
mospd1
Motile sperm domain containing 1.
      
 0.451
runx2
Runt-related transcription factor.
   
 0.442
LOC101160370
Runt-related transcription factor.
   
 0.442
LOC101173202
RUNX family transcription factor 1.
   
 0.442
foxf1
Forkhead box F1.
   
 
 0.428
LOC101168243
Forkhead box F2a.
   
 
 0.428
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.