STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clip3CAP-GLY domain containing linker protein 3. (634 aa)    
Predicted Functional Partners:
cyld
Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.
    
 0.552
LOC101163809
Cylindromatosis (turban tumor syndrome), b.
    
0.552
LOC101168449
Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.
    
 0.552
LOC101167576
Uncharacterized protein.
    
 0.534
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
  0.508
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
  0.508
phkb
Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.
      
 0.485
bub3
BUB3 mitotic checkpoint protein.
    
 0.484
rps27a
Ribosomal protein S27a.
    
 0.470
ubc
Ubiquitin B.
    
 0.462
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.