STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168279SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family. (219 aa)    
Predicted Functional Partners:
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.995
stx5
Syntaxin 5A; Belongs to the syntaxin family.
   
 0.994
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.993
stx18
Syntaxin 18.
   
 0.993
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.990
BET1L
Bet1 golgi vesicular membrane trafficking protein like.
   
 0.983
LOC101160821
BCL2 interacting protein 1a.
   
 0.981
LOC101155624
BCL2 interacting protein 1b.
   
 0.981
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.952
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.938
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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