STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dclre1aC2H2-type domain-containing protein. (548 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.880
fancm
Uncharacterized protein.
   
 0.870
sympk
Symplekin.
   
 0.865
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.857
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.853
papolg
Poly(A) polymerase gamma.
    
 0.842
LOC101159890
FIP1 like 1b (S. cerevisiae).
    
 0.839
ints4
Integrator complex subunit 4.
   
 0.836
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.827
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
   
 0.819
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.