STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161432Reticulon. (218 aa)    
Predicted Functional Partners:
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.586
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.554
stx5
Syntaxin 5A; Belongs to the syntaxin family.
      
 0.509
LOC101170271
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.473
atl1
Atlastin GTPase 1.
    
 
 0.472
LOC101170803
Receptor expression-enhancing protein.
    
 
 0.467
LOC101164298
Receptor expression-enhancing protein.
    
 
 0.467
LOC101161367
GTP cyclohydrolase 2.
    
   0.463
LOC101168423
GTP cyclohydrolase 1.
    
   0.463
STT3B
STT3 oligosaccharyltransferase complex catalytic subunit B.
   
  
 0.450
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.