STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps13dVacuolar protein sorting 13 homolog D. (4284 aa)    
Predicted Functional Partners:
LOC101164153
Immunoglobin superfamily, member 21b.
      
 0.623
LOC101175148
Aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase).
      
 0.621
park7
DJ-1.
      
 0.606
errfi1
ERBB receptor feedback inhibitor 1a.
      
 0.567
kiaa2013
Si:dkeyp-104h9.5.
      
 0.564
LOC101155513
Taste 1 receptor member 2.
      
 0.561
ENSORLP00000036610
Taste 1 receptor member 2.
      
 0.561
prr16
Proline rich 16.
      
 0.558
tas1r3
G_PROTEIN_RECEP_F3_4 domain-containing protein.
      
 0.508
ppib
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
      
 0.502
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.