STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clcn3Chloride channel protein. (880 aa)    
Predicted Functional Partners:
ostm1
Osteoclastogenesis associated transmembrane protein 1.
   
 0.709
lats1
Large tumor suppressor kinase 1.
    
 0.627
lats2
Large tumor suppressor kinase 2.
    
 0.627
PTPN14
Protein tyrosine phosphatase non-receptor type 14.
    
 
 0.576
bsnd
Uncharacterized protein.
   
 
 0.531
eef1g
Eukaryotic translation elongation factor 1 gamma.
  
  
 0.448
LOC101165429
Anion exchange protein.
   
  
 0.441
LOC101167104
Anion exchange protein.
   
  
 0.441
ptpn21
Protein tyrosine phosphatase non-receptor type 21.
    
 
 0.422
exosc10
Exosome component 10.
     
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.