STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Myo1hMyosin IHa. (401 aa)    
Predicted Functional Partners:
H2LTT3_ORYLA
Myosin IHa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
 
      0.853
LOC101167616
Usher syndrome 1C.
   
 0.532
ENSORLP00000040280
Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
 
      0.519
LOC101156094
Whirlin b.
    
 0.489
whrn
Whirlin a.
    
 0.489
LOC101169538
Usher syndrome 1Ga (autosomal recessive).
   
 0.477
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.477
LOC101174708
Usher syndrome 1Gb (autosomal recessive).
   
 0.477
ENSORLP00000044012
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
 
  
  0.453
H2MC42_ORYLA
Myosin VAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
 
  
 0.439
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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