STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105354685Cyclin and CBS domain divalent metal cation transport mediator 4b. (830 aa)    
Predicted Functional Partners:
gmps
Guanine monophosphate synthase.
  
 
 0.661
LOC101162197
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
  
  
 0.641
neu3b
Sialidase 3b.
    
 
 0.587
atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
    
 0.562
LOC101157004
Protein tyrosine phosphatase 4A3b.
    
 
 0.534
dapk1
Death-associated protein kinase 1.
      
 0.522
ybey
YbeY metalloendoribonuclease.
  
  
 0.483
ptp4a1
Protein tyrosine phosphatase 4A1.
    
 
 0.451
LOC101164411
Protein tyrosine phosphatase 4A2b.
    
 
 0.451
sorl1
Sortilin-related receptor, L(DLR class) A repeats containing.
   
  
 0.436
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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