STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prrc2aProline-rich coiled-coil 2A. (1896 aa)    
Predicted Functional Partners:
YTHDC2
YTH domain containing 2.
   
 
 0.507
son
Uncharacterized protein.
   
    0.487
gpank1
Uncharacterized protein.
      
 0.452
ubap2
Ubiquitin associated protein 2a.
   
 
 0.444
ubap2l
Ubiquitin associated protein 2-like.
   
 
 0.444
LOC101170438
Ubiquitin associated protein 2b.
   
 
 0.444
mettl14
Methyltransferase like 14; Belongs to the MT-A70-like family.
      
 0.431
ythdf3
YTH N(6)-methyladenosine RNA binding protein 3.
    
 
 0.429
ythdf2
YTH N(6)-methyladenosine RNA binding protein 2.
    
 
 0.425
sec16a
Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.
   
 
 0.412
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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