STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ifrd1Interferon-related developmental regulator 1. (428 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
    
 0.993
rps27a
Ribosomal protein S27a.
    
 0.881
commd2
COMM domain containing 2.
    
 0.816
commd1
Copper metabolism (Murr1) domain containing 1.
    
 0.805
COMMD10
COMM domain containing 10.
   
 0.799
rpl8
60S ribosomal protein L8.
   
 
 0.789
ccdc22
Coiled-coil domain containing 22.
    
 0.787
rpl18a
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
    
 
 0.783
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
 
 0.773
rps7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
 
 0.768
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.