STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RUBCNLRubicon like autophagy enhancer. (773 aa)    
Predicted Functional Partners:
uvrag
UV radiation resistance associated gene.
    
 0.959
rubcn
Rubicon autophagy regulator.
     
 
0.900
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.722
c11h1orf109
C19h1orf109 homolog (H. sapiens).
   
    0.722
ftsj1
FtsJ RNA 2'-O-methyltransferase 1.
   
    0.691
acot11
Acyl-coenzyme A thioesterase 11.
   
    0.609
LOC101159853
Uncharacterized protein.
   
    0.609
LOC101175409
Limb and CNS expressed 1.
   
    0.597
LIX1L
Limb and CNS expressed 1 like.
   
    0.597
LOC101162409
Src homology 2 domain containing transforming protein D, a.
   
    0.595
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.