STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167013ADAM metallopeptidase with thrombospondin type 1 motif, 3. (1163 aa)    
Predicted Functional Partners:
ccbe1
Collagen and calcium binding EGF domains 1.
      
 0.562
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
   
 0.527
tal2
T-cell acute lymphocytic leukemia 2.
      
 0.501
c9
Complement component 9.
   
  
 0.412
vegfc
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
   
  
 0.408
adamts8
ADAM metallopeptidase with thrombospondin type 1 motif, 15b.
   
 
0.408
itgbl1
Integrin, beta-like 1.
   
 
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.