STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsph14Uncharacterized protein. (341 aa)    
Predicted Functional Partners:
cfap52
Cilia and flagella associated protein 52.
   
 
 0.773
ccdc65
NYD-SP28 domain-containing protein.
   
 
 0.683
ankef1
Ankyrin repeat and EF-hand domain containing 1a.
   
 
 0.635
DLEC1
Uncharacterized protein.
    
 
 0.624
spata18
Spermatogenesis associated 18.
   
  
 0.617
lrrc34
Leucine rich repeat containing 34.
    
 
 0.605
cfap161
Cilia and flagella associated protein 161.
   
  
 0.593
tsnaxip1
TSNAXIP1_N domain-containing protein.
   
  
 0.593
pacrg
PARK2 co-regulated.
   
 
 0.587
Wdr90
WD_REPEATS_REGION domain-containing protein.
    
   0.582
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.