STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
begainUncharacterized protein. (672 aa)    
Predicted Functional Partners:
dmap1
DNA methyltransferase 1 associated protein 1.
   
 0.805
gtf2f1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.775
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.759
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.748
meaf6
MYST/Esa1-associated factor 6.
    
 0.741
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.732
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.732
sgf29
SAGA complex associated factor 29.
   
 0.731
vps72
Vacuolar protein sorting 72 homolog a.
    
 0.728
H2M348_ORYLA
Tudor-knot domain-containing protein.
    
 0.723
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.