STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vitVitrin. (800 aa)    
Predicted Functional Partners:
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
      
 0.815
fau
40S ribosomal protein S30.
   
 0.776
LOC101169207
Cyclin-dependent kinase 12.
    
 
 0.516
LOC101160447
RAN binding protein 2.
   
 
  0.510
gle1
Uncharacterized protein.
    
 0.475
rps28
Ribosomal protein S28.
   
   0.438
rps19
Ribosomal protein S19.
   
 
 0.438
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.437
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.432
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.415
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.