STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000027263annotation not available (506 aa)    
Predicted Functional Partners:
prpf19
Pre-mRNA processing factor 19.
    
 0.715
xab2
XPA binding protein 2.
   
 0.714
snw1
SNW domain containing 1.
    
 0.709
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.692
H2LA82_ORYLA
Nucleoporin 88.
    
 0.684
nup155
Nucleoporin 155.
   
 0.681
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 0.664
bud31
BUD31 homolog.
   
 0.662
nup85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.662
nup214
Nup214_FG domain-containing protein.
    
 0.659
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.