STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sin3aSIN3 transcription regulator family member Aa. (1274 aa)    
Predicted Functional Partners:
suds3
SDS3 homolog, SIN3A corepressor complex component.
   
 0.956
phf12
PHD finger protein 12b.
   
 0.948
LOC101167186
Methyl CpG binding protein 2.
    
 0.908
H2M348_ORYLA
Tudor-knot domain-containing protein.
    
 0.907
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.907
Arid4a
Tudor domain-containing protein.
    
 0.907
LOC101161599
BRMS1 like transcriptional repressor b.
   
 0.866
brms1l
Uncharacterized protein.
   
 0.862
brms1
BRMS1 transcriptional repressor and anoikis regulator.
   
 0.858
sap130
Sin3A-associated protein a.
   
 0.830
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.