STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syf2SYF2 pre-mRNA-splicing factor. (233 aa)    
Predicted Functional Partners:
xab2
XPA binding protein 2.
    
 0.999
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 0.999
isy1
ISY1 splicing factor homolog.
   
 0.997
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 0.997
plrg1
Pleiotropic regulator 1.
    
 0.996
prpf19
Pre-mRNA processing factor 19.
    
 0.995
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.993
slu7
SLU7 homolog, splicing factor.
   
 0.992
bud31
BUD31 homolog.
   
 
 0.992
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.