STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173223Extended synaptotagmin-like protein 1a. (989 aa)    
Predicted Functional Partners:
sharpin
SHANK-associated RH domain interacting protein.
    
 
 0.813
LOC101161995
Platelet endothelial aggregation receptor 1.
      
 0.664
LOC101156568
Bassoon (presynaptic cytomatrix protein) b.
     
 0.543
LOC101164943
Synaptotagmin XV.
     
 0.533
tspan11
Tetraspanin.
    
 
 0.532
LOC101155978
Piccolo presynaptic cytomatrix protein a.
   
 
 0.530
ENSORLP00000041927
Rabphilin 3A homolog (mouse), a.
      
 0.509
H2M6A2_ORYLA
Intersectin 1 (SH3 domain protein).
    
 0.493
H2M6E4_ORYLA
Uncharacterized protein.
    
 0.493
LOC101165932
Intersectin 2a.
    
0.493
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.