STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156637Glycine cleavage system protein H (aminomethyl carrier), b. (203 aa)    
Predicted Functional Partners:
gldc
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
 
 0.995
amt
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
 
 0.982
lipt1
Lipoyltransferase 1.
   
 0.948
mthfr
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
    
 0.931
sardh
Sarcosine dehydrogenase.
  
 0.926
pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
  
 0.926
dmgdh
Dimethylglycine dehydrogenase.
  
 0.926
tyms
Thymidylate synthetase.
    
 0.918
iba57
Iron-sulfur cluster assembly factor IBA57.
     
 0.887
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
  
 0.875
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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