STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secisbp2SECIS binding protein 2. (735 aa)    
Predicted Functional Partners:
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.864
eefsec
Eukaryotic elongation factor, selenocysteine-tRNA-specific.
    
 0.785
rpl30
Ribosomal protein L30.
    
 0.784
gps1
G protein pathway suppressor 1.
   
 0.696
LOC101167922
Endoplasmic reticulum oxidoreductase alpha.
   
 0.695
ero1b
Endoplasmic reticulum oxidoreductase beta.
   
 0.695
dld
Dihydrolipoyl dehydrogenase.
  
 0.690
LOC101160304
Calreticulin.
   
 0.686
LOC101162115
Calreticulin.
   
 0.686
LOC101169735
Calreticulin.
   
 0.686
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.