STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rp9RP9 pre-mRNA splicing factor. (237 aa)    
Predicted Functional Partners:
LOC101169441
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
      
 0.816
snw1
SNW domain containing 1.
   
 
 0.765
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 
 0.752
prpf8
Pre-mRNA processing factor 8.
    
 
 0.742
cwc25
CWC25 spliceosome associated protein homolog.
   
 
 0.706
rlbp1
Retinaldehyde binding protein 1b.
      
 0.678
LOC101156145
Melanin-concentrating hormone receptor 1a.
      
 0.678
NKAPL
NFKB activating protein like.
   
 
 0.676
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
  
 0.597
galns
Galactosamine (N-acetyl)-6-sulfatase.
      
 0.594
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.