STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpse2Heparanase 2. (557 aa)    
Predicted Functional Partners:
hpse
Heparanase.
  
  
 
0.903
ids
Iduronate 2-sulfatase.
     
 0.902
lrig2
Leucine-rich repeats and immunoglobulin-like domains 2.
      
 0.559
SDC3
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.513
LOC101169622
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.510
LOC101162518
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.442
LOC101156278
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.442
hspg2
Heparan sulfate proteoglycan 2.
     
 0.437
agrn
Agrin.
     
 0.417
gpc5
Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
     
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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