STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105355926C2H2-type domain-containing protein. (1423 aa)    
Predicted Functional Partners:
ddx10
RNA helicase.
    
 0.629
nol6
Nucleolar protein 6.
   
 
 0.604
tefm
UTP6 small subunit processome component.
    
 
 0.590
ddx18
RNA helicase.
    
 0.584
bysl
Bystin-like.
    
 
 0.581
rrp36
Ribosomal RNA processing 36.
   
   0.579
nom1
Nucleolar protein with MIF4G domain 1.
   
   0.575
utp3
UTP3 small subunit processome component.
   
   0.572
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
   0.572
nop14
NOP14 nucleolar protein homolog (yeast).
    
   0.572
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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