STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD12Sterile alpha motif domain containing 12. (243 aa)    
Predicted Functional Partners:
MARCHF6
Membrane associated ring-CH-type finger 6.
      
 0.678
stard7
StAR-related lipid transfer (START) domain containing 7.
      
 0.678
LOC101168653
RING-CH-type domain-containing protein.
      
 0.678
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
      
 0.678
brca1
Uncharacterized protein.
      
 0.583
ksr2
Kinase suppressor of ras 2.
    
 0.549
ksr1
Kinase suppressor of ras 1a.
    
 0.549
LOC101167472
Connector enhancer of kinase suppressor of Ras 2b.
    
 0.502
LOC101174439
Si:ch211-26b3.4.
    
 0.502
LOC101157335
Uncharacterized protein.
    
 0.502
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.