STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167935Uncharacterized protein. (1860 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
  0.758
LOC101160447
RAN binding protein 2.
   
 
  0.510
LOC101172442
C2H2-type domain-containing protein.
  
 
   0.500
LOC101173740
Uncharacterized protein.
  
  
  0.480
LOC101162694
Human immunodeficiency virus type I enhancer binding protein 3a.
  
 
   0.478
gle1
Uncharacterized protein.
    
 0.475
LOC101166753
Uncharacterized protein.
  
 
 0.461
LOC101155329
Membrane-associated ring finger (C3HC4) 1.
  
     0.454
LOC105358650
Uncharacterized protein.
  
     0.444
ENSORLP00000030015
Uncharacterized protein.
  
     0.441
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.