STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt1Synaptotagmin Ia. (536 aa)    
Predicted Functional Partners:
LOC101175011
Syntaxin 1A (brain); Belongs to the syntaxin family.
   
 0.841
LOC101170749
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.839
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.839
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
   
 0.799
LOC101165744
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.798
LOC101173249
Zgc:92912.
   
 0.712
LOC101164413
Vesicle-associated membrane protein 1.
   
 0.712
vamp2
Vesicle-associated membrane protein 2.
   
 0.712
LOC101157106
Syntaxin 1B; Belongs to the syntaxin family.
   
 0.634
syt4
Synaptotagmin IV.
   
0.619
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.