STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnip1TNFAIP3 interacting protein 1. (650 aa)    
Predicted Functional Partners:
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 0.980
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
    
 
 0.938
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 
 0.921
ubc
Ubiquitin B.
    
   0.831
optn
Optineurin.
    
 
 0.690
LOC101155211
Serine and arginine rich splicing factor 7a.
      
 0.615
rrbp1
Ribosome binding protein 1a.
    
 
 0.612
emc10
ER membrane protein complex subunit 10.
      
 0.608
vcpip1
Valosin containing protein (p97)/p47 complex interacting protein 1.
   
 0.596
otud7a
OTU deubiquitinase 7A.
   
 0.596
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.