STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec63SEC63 homolog, protein translocation regulator. (763 aa)    
Predicted Functional Partners:
sec61a1
Plug_translocon domain-containing protein.
   
 
 0.998
LOC101169601
Plug_translocon domain-containing protein.
   
 
 0.998
sec62
SEC62 homolog, preprotein translocation factor.
   
 
 0.997
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.996
sec61g
SEC61 translocon gamma subunit.
    
 
 0.996
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
  
 
 0.959
hyou1
Hypoxia up-regulated 1.
  
 
 0.868
mkln1
Muskelin 1, intracellular mediator containing kelch motifs.
      
 0.842
strada
STE20 related adaptor alpha.
    
 
 0.818
STRADB
STE20 related adaptor beta.
    
 
 0.818
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.