STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eya4Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (642 aa)    
Predicted Functional Partners:
tbpl1
TBP-like 1.
   
  
 0.759
hbs1l
HBS1-like translational GTPase.
      
 0.648
six2
SIX homeobox 2a.
   
 
 0.594
LOC101162149
SIX homeobox 9.
   
 
 0.594
LOC101162386
SIX homeobox 5.
   
 
 0.594
six4
SIX homeobox 4a.
   
 
 0.594
six1
SIX homeobox 1a.
   
 
 0.594
rps12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
      
 0.587
aldh8a1
Aldehyde dehydrogenase 8 family, member A1; Belongs to the aldehyde dehydrogenase family.
      
 0.582
rlbp1
Retinaldehyde binding protein 1b.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.